Faster Dynamic Algorithms for Chordal Graphs, and an Application to Phylogeny

نویسندگان

  • Anne Berry
  • Alain Sigayret
  • Jeremy P. Spinrad
چکیده

We improve the current complexities for maintaining a chordal graph by starting with an empty graph and repeatedly adding or deleting edges.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Acyclic Colorings and Triangulations of Weakly Chordal Graphs

An acyclic coloring of a graph is a proper vertex coloring without bichromatic cycles. We show that the acyclic colorings of any weakly chordal graph G correspond to the proper colorings of triangulations of G. As a consequence, we obtain polynomial-time algorithms for the acyclic coloring problem and the perfect phylogeny problem on the class of weakly chordal graphs. Our results also imply li...

متن کامل

The application of chordal graphs to inferring phylogenetic trees of languages

Phylogenetic methods are used to build evolutionary trees of languages given character data that may include lexical, phonological, and morphological information. Such data rarely admits a perfect phylogeny. We explore the use of the more permissive conservative Dollo phylogeny as an alternative or complementary approach. We propose a heuristic search algorithm based on the notion of chordal gr...

متن کامل

Strictly chordal graphs are leaf powers

A fundamental problem in computational biology is the phylogeny reconstruction for a set of specific organisms. One of the graph theoretical approaches is to construct a similarity graph on the set of organisms where adjacency indicates evolutionary closeness, and then to reconstruct a phylogeny by computing a tree interconnecting the organisms such that leaves in the tree are labeled by the or...

متن کامل

Complement of Special Chordal Graphs and Vertex Decomposability

In this paper, we introduce a subclass of chordal graphs which contains $d$-trees and show that their complement are vertex decomposable and so is shellable and sequentially Cohen-Macaulay.

متن کامل

Unique Perfect Phylogeny Characterizations via Uniquely Representable Chordal Graphs

The perfect phylogeny problem is a classic problem in computational biology, where we seek an unrooted phylogeny that is compatible with a set of qualitative characters. Such a tree exists precisely when an intersection graph associated with the character set, called the partition intersection graph, can be triangulated using a restricted set of fill edges. Semple and Steel used the partition i...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2005